There are lots (at least some) that do the yearly tripp to "bilprovningen" with chargers on. I have done it myself two times and not a word about the charger. The last time the guy even asked to see the engine because he was interested. His conslusion was "cool".
I think the trick is that our cars are really unusual for the people there to see. They might know that Lotus often use engines from other brands and if they really know their stuff they might even know of a charged Lotus. If you try to make the installation as OEM looking as possible I can't se why it should be a problem. Since the charger is OEM (from another GM car) it really looks OEM.
The dutch software gives you the oportunity to "de tune" your car once a year if you want to.
ITB's will be more easy to spot, I think.