I've compared some of your pics with the one below (nicked out of an other topic), your new uprights seems quite a lot higher.
That is the point of Nitron or for instance Eliseparts GT uprights. The axle center is moved up about 20mm on each of these uprights.
This means that the car is immediately 'lowered' by 20mm (even without touching the suspension), but keeps the correct wishbone geometry for longer if you lower it further than that with different suspension on it.
If you lower a car to 100mm or less on the normal uprights then the wishbones start to angle upwards at it's base setting and this is not good for the road holding as it messes up a number of things (eg. you're way off on the bumpsteer graph, your dampers run out of compression stroke, the camber gain is wrong, etc.).
By moving the axle line up on the uprights you move the wishbones down and back to horizontal, so the suspension can 'work' properly again.
Disadvantage (as shown on this thread) is indeed that your lower wishbones get closer to the wheel edge, so to stop super-wide wheels from rubbing you'll need to lower the wheel offset and perhaps modify the clam with arch extentions to keep the tyre covered.
In thid case with a 9J wheel and corresponding tyre (245? 255?) I'd be surprised if it didn't rub on the inside of the arch liners too with the normal affset, so it needs to move outward anyway...
Bye, Arno.