Well, I'm not sure I've fixed them but I've definitely frightened them into a temporary silence. At first going out they were much as yesterday, quiet to begin with, then individually starting to squeal at low speed as they warmed a little.
Eventually I found a nice straight empty piece of road down by Benson RAF base and did 5 * 60 -> 15 stops at full bore one on top of the other. ABS active on 3 of them. Slight smell of busy brakes but nothing untoward. Then 1 mile later heading downhill did 3 * 100 -> 15 stops at full bore one on top of the other. ABS activity on all of them. Strong smell of busy brakes and possible slight smoke seen but nothing untoward - or at least other than caused by the ABS. No immediate sign of fade although I did have a soft pedal which recovered on the third stroke and has been good since.... The caliper was not particularly hot although the disk was radiating nicely.
Since then they have been as good as gold. Not a squeal has been heard.
I have to say, even though they have now quietened down, I don't find them exceptional. The remarks from most using the 1144 has been

as they are reported to act almost like a force amplifier and really grab those disks. I don't find quite that. They do work, no problem with that, but they seem somewhat flat in response. They do work from cold, no problem with that. I wonder if they are as consistent at higher pedal pressures and when hot? They are lots better than the OEM no question.
Anyway, as yet, I don't feel I know as much about the new braking system characteristics as I would like. Maybe the feedback will now settle down and I will learn more. I'll leave them for a week whilst I work that out. Then I think I will have the SBS part-worns put back in so that I can do a back to back comparison. Now that will be interesting because a I rated the SBS in combo with the Pagid 16 groove disk. I suppose if I got one of those accelerometer thingies it might make the comparison all a bit more meaningful.